Journal of Siberian Federal University. Mathematics & Physics / SAXS structure studies of the aptamer to the Oncolytic Virus VV-GMCSF-Lact

Full text (.pdf)
Issue
Journal of Siberian Federal University. Mathematics & Physics. 2024 17 (6)
Authors
Moryachkov, Roman V.; Malysheva, Daria O.; Dymova, Maya A.; Richter, Vladimir A.; Shchugoreva, Irina A.; Kichkailo, Anna S.
Contact information
Moryachkov, Roman V. : Federal Research Center KSC SB RAS Krasnoyarsk, Russian Federation; OCRID: 0000-0002-0409-779X; Malysheva, Daria O. : Institute of Chemical Biology and Fundamental Medicine SB RAS Novosibirsk, Russian Federation; OCRID: 0009-0005-1210-1815; Dymova, Maya A. : Institute of Chemical Biology and Fundamental Medicine SB RAS Novosibirsk, Russian Federation; OCRID: 0000-0002-7281-9096; Richter, Vladimir A. : Institute of Chemical Biology and Fundamental Medicine SB RAS Novosibirsk, Russian Federation; OCRID: 0000-0001-5849-5892; Shchugoreva, Irina A. : Federal Research Center KSC SB RAS Krasnoyarsk, Russian Federation; Prof. V. F. Voino-Yasenetsky Krasnoyarsk State Medical University Krasnoyarsk, Russian Federation; OCRID: 0000-0003-4207-1627; Kichkailo, Anna S. : Federal Research Center KSC SB RAS Krasnoyarsk, Russian Federation ;Prof. V. F. Voino-Yasenetsky Krasnoyarsk State Medical University Krasnoyarsk, Russian Federation; OCRID: 0000-0003-0690-7837
Keywords
aptamer; small-angle X-ray scattering; SAXS; tertiary structure; virus; VV-GMCSF-Lact; molecular dynamics; molecular simulations; VV-GMCSF-Lact
Abstract

Oncolytic viral therapy is a relatively young but rapidly developing area in cancer therapy. Some viruses can be used to combat cancer cells due to their cytotoxic action, but it is desirable to inhibit the influence of the human immune system on them. Aptamers, short oligonucleotides capable of specifically binding to their molecular targets, can perform a dual role: binding to oncoviruses and blocking their receptors through which the immune system attacks them, and also delivering them to another target — cancer cells, to increase the effectiveness of the virus. For such a complex task, it is critically important to know the three-dimensional structure of such bifunctional molecules as aptamers. This work presents a study of the NV14t_56 aptamer to the oncolytic virus VV-GMCSF-Lact using the small-angle X-ray scattering method in solution, determination of the structural characteristics extracted using this method, and validation of the molecular model constructed on the basis of the predicted secondary structure

Pages
783–790
EDN
VDNIGF
Paper at repository of SibFU
https://elib.sfu-kras.ru/handle/2311/154143