Journal of Siberian Federal University. Biology / Seven-Cluster Structure of Larch Chloroplast Genome

Full text (.pdf)
Issue
Journal of Siberian Federal University. Biology. 2015 8 (3)
Authors
Sadovsky, Michael G.; Bondar, Eugenia I.; Putintseva, Yulia A.; Oreshkova, Natalia V.; Vaganov, Eugene A.; Krutovsky, Konstantin V.
Contact information
Sadovsky, Michael G.:Institute of Computational Modelling SB RAS 50/44 Akademgorodok, Krasnoyarsk, 660036, Russia; E-mail: ; Bondar, Eugenia I.:Siberian Federal University Genome Research and Education Centre 50a/2 Akademgorodok, Krasnoyarsk, 660036, Russia; Putintseva, Yulia A.:Siberian Federal University Genome Research and Education Centre 50a/2 Akademgorodok, Krasnoyarsk, 660036, Russia; Oreshkova, Natalia V.:Siberian Federal University Genome Research and Education Centre 50a/2 Akademgorodok, Krasnoyarsk, 660036, Russia; V. N. Sukachev Institute of Forest SB RAS 50/28 Akademgorodok, Krasnoyarsk, 660036, Russia; Vaganov, Eugene A.:Siberian Federal University Genome Research and Education Centre 50a/2 Akademgorodok, Krasnoyarsk, 660036, Russia; Krutovsky, Konstantin V.:Institute of Computational Modelling SB RAS 50/44 Akademgorodok, Krasnoyarsk, 660036, Russia; Georg-August-University of Göttingen 2 Büsgenweg, Göttingen, D-37077, Germany; N. I. Vavilov Institute of General Genetics RAS 3 Gubkin Str., Moscow, 119333, Russia; Texas A&M University HFSB 305, 2138 TAMU, College Station, Texas, 77843, USA
Keywords
chloroplast genome; complexity; frequency dictionary; order; phase; triplet
Abstract

The paper presents a novel approach to study a nucleotide sequence structure with respect to the chloroplast genome DNA sequence analysis. A specific frequencies distribution pattern of the consecutive triple nucleotide fragments was identified in the chloroplast genome DNA sequence, which demonstrated a non-degenerated pattern with seven clusters

Pages
268-277
DOI
10.17516/1997-1389-2015-8-3-268-277
Paper at repository of SibFU
http://elib.sfu-kras.ru/handle/2311/19897

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