Journal of Siberian Federal University. Biology / Symmetry of Siberian Larch Transcriptome

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Issue
Journal of Siberian Federal University. Biology. 2015 8 (3)
Authors
Sadovsky, Michael G.; Birukov, Vladislav V.; Putintseva, Yuliya A.; Oreshkova, Nataliya V.; Vaganov, Eugene A.; Krutovsky, Konstantin V.
Contact information
Sadovsky, Michael G.:Institute of Computational Modelling SB RAS 50/44 Akademgorodok, Krasnoyarsk, 660036, Russia; E-mail: ; Birukov, Vladislav V.:Siberian Federal University Genome Research and Education Centre 50a/2 Akademgorodok, Krasnoyarsk, 660036, Russia; Putintseva, Yuliya A.:Siberian Federal University Genome Research and Education Centre 50a/2 Akademgorodok, Krasnoyarsk, 660036, Russia; Oreshkova, Nataliya V.:Siberian Federal University Genome Research and Education Centre 50a/2 Akademgorodok, Krasnoyarsk, 660036, Russia; V. N. Sukachev Institute of Forest SB RAS 50/28 Akademgorodok, Krasnoyarsk, 660036, Russia; Vaganov, Eugene A.:Siberian Federal University Genome Research and Education Centre 50a/2 Akademgorodok, Krasnoyarsk, 660036, Russia; Krutovsky, Konstantin V.:Siberian Federal University Genome Research and Education Centre 50a/2 Akademgorodok, Krasnoyarsk, 660036, Russia; Georg-August-University of Göttingen 2 Büsgenweg, Göttingen, D-37077, Germany; N. I. Vavilov Institute of General Genetics RAS 3 Gubkin Str., Moscow, 119333, Russia; Texas A&M University HFSB 305, 2138 TAMU, College Station, Texas, 77843, USA
Keywords
nucleotide sequence complexity; frequency dictionary; order; Larix sibirica; Siberian larch; symmetry; transcriptome; triplet
Abstract

The paper presents a novel approach to infer a structuredness in a set of symbol sequences such as transcriptome nucleotide sequences. A distribution pattern of triplet frequencies in the Siberian larch (Larix sibirica Ledeb.) transcriptome sequences was investigated in the presented study. It was found that the larch transcriptome demonstrates a number of unexpected symmetries in the statistical and combinatorial properties

Pages
278-286
Paper at repository of SibFU
https://elib.sfu-kras.ru/handle/2311/19898

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